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Mycobacterium tuberculosis InhA bound with PTH-NAD adduct
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ENY PDB ENTRY 1ENY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 12% MDP, 4% DMSO, 0.1M Hepes, 0.025M Sodium Citrate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.78 67.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.592 α = 90 b = 100.521 β = 90 c = 186.499 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 121 IMAGE PLATE RIGAKU RAXIS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.6 0.154 0.101 9.69 3.4 30156 30035 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.991 0.145 1.45 3.4 2980
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ENY 2.5 19.99 28424 1522 99.53 0.21893 0.2163 0.26771 0.2229 RANDOM 33.562
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.22 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.73 r_dihedral_angle_4_deg 21.911 r_dihedral_angle_3_deg 20.218 r_dihedral_angle_1_deg 7.24 r_scangle_it 3.1 r_angle_refined_deg 2.139 r_scbond_it 1.928 r_mcangle_it 1.18 r_mcbond_it 0.702 r_nbtor_refined 0.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.73 r_dihedral_angle_4_deg 21.911 r_dihedral_angle_3_deg 20.218 r_dihedral_angle_1_deg 7.24 r_scangle_it 3.1 r_angle_refined_deg 2.139 r_scbond_it 1.928 r_mcangle_it 1.18 r_mcbond_it 0.702 r_nbtor_refined 0.325 r_chiral_restr 0.289 r_nbd_refined 0.267 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.206 r_xyhbond_nbd_refined 0.147 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3988 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing