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Crystal Structure of the BARD1 BRCT Domains
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 100mM MES, 20% PEG 8K, 150mM Ammonium Sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.63 53.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.441 α = 90 b = 75.797 β = 90 c = 116.57 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Dual Slits 2005-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 0.9784 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.3 0.064 30.7 7.7 40185
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 91.7 0.402 4.3 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 19.87 36401 1910 93.82 0.19871 0.19618 0.2002 0.24743 0.2551 RANDOM 40.929
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.5 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.72 r_dihedral_angle_4_deg 19.555 r_dihedral_angle_3_deg 15.017 r_dihedral_angle_1_deg 6.984 r_scangle_it 3.91 r_scbond_it 2.808 r_angle_refined_deg 1.865 r_mcangle_it 1.86 r_mcbond_it 1.527 r_angle_other_deg 0.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.72 r_dihedral_angle_4_deg 19.555 r_dihedral_angle_3_deg 15.017 r_dihedral_angle_1_deg 6.984 r_scangle_it 3.91 r_scbond_it 2.808 r_angle_refined_deg 1.865 r_mcangle_it 1.86 r_mcbond_it 1.527 r_angle_other_deg 0.987 r_symmetry_vdw_refined 0.553 r_mcbond_other 0.363 r_symmetry_vdw_other 0.254 r_nbd_refined 0.224 r_nbd_other 0.205 r_xyhbond_nbd_refined 0.198 r_nbtor_refined 0.191 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.114 r_nbtor_other 0.09 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3382 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SHELXS phasing