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Receiver domain from Myxococcus xanthus social motility protein FrzS (Y102A Mutant)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GKG pdb entry 2gkg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 291 0.1M MIB buffer pH 7.0, 25% w/v PEG 1500, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.02 39.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.804 α = 90 b = 63.804 β = 90 c = 46.738 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 100 0.093 0.093 12 7.7 26709 26709 12.057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 100 0.837 0.837 2.7 7.4 28578
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2gkg 1.3 20 25322 25322 1387 99.96 0.13352 0.13352 0.13191 0.16244 0.1858 RANDOM 12.977
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.1 0.21 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.638 r_dihedral_angle_4_deg 14.645 r_dihedral_angle_3_deg 10.543 r_sphericity_free 7.755 r_dihedral_angle_1_deg 6.828 r_scangle_it 3.653 r_scbond_it 2.9 r_sphericity_bonded 2.813 r_mcangle_it 2.158 r_mcbond_it 1.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.638 r_dihedral_angle_4_deg 14.645 r_dihedral_angle_3_deg 10.543 r_sphericity_free 7.755 r_dihedral_angle_1_deg 6.828 r_scangle_it 3.653 r_scbond_it 2.9 r_sphericity_bonded 2.813 r_mcangle_it 2.158 r_mcbond_it 1.787 r_angle_refined_deg 1.59 r_rigid_bond_restr 1.412 r_angle_other_deg 0.882 r_mcbond_other 0.635 r_symmetry_vdw_other 0.294 r_nbd_refined 0.234 r_xyhbond_nbd_other 0.215 r_xyhbond_nbd_refined 0.205 r_nbd_other 0.193 r_nbtor_refined 0.174 r_symmetry_vdw_refined 0.132 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.107 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 910 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling EPMR phasing