☰ Navigation Tabs
Structures of and interactions between domains of trigger factor from Themotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 14% PEG 4000, 0.2M potassium chloride 0.2M, 0.1M MES, pH 6.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.68 54.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.092 α = 90 b = 86.553 β = 90 c = 32.954 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 KOHZU double crystal monochromator with a sagittally focused second crystal. 2005-02-24 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97917, 0.97884, 0.96864 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 91.8 0.029 28.3 3 2373
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 68.2 0.126 1.8 302
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 19.8 2343 224 100 0.262 0.256 0.2559 0.262 0.2383 RANDOM 101.166
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 -0.31 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.104 r_dihedral_angle_4_deg 18.079 r_dihedral_angle_3_deg 17.455 r_mcangle_it 3.261 r_scangle_it 3.18 r_scbond_it 1.891 r_mcbond_it 1.752 r_angle_refined_deg 1.208 r_dihedral_angle_1_deg 1.093 r_nbtor_refined 0.343
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.104 r_dihedral_angle_4_deg 18.079 r_dihedral_angle_3_deg 17.455 r_mcangle_it 3.261 r_scangle_it 3.18 r_scbond_it 1.891 r_mcbond_it 1.752 r_angle_refined_deg 1.208 r_dihedral_angle_1_deg 1.093 r_nbtor_refined 0.343 r_symmetry_vdw_refined 0.302 r_nbd_refined 0.299 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 898 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction CCP4 data scaling