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Crystal structure of IRAK-4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.4 293 2.6 - 2.9 M ammonium sulfate, PH 6.4-7.9 , EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.502 α = 90 b = 139.748 β = 123.76 c = 87.656 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 90 0.06 79301
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 90 72767 3845 99.78 0.2117 0.20914 0.2605 0.257 RANDOM 39.421
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 0.66 -0.96 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.376 r_dihedral_angle_4_deg 23.485 r_dihedral_angle_3_deg 16.986 r_dihedral_angle_1_deg 6.141 r_scangle_it 4.284 r_scbond_it 2.691 r_mcangle_it 2.187 r_angle_refined_deg 1.694 r_mcbond_it 1.302 r_symmetry_hbond_refined 0.665
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.376 r_dihedral_angle_4_deg 23.485 r_dihedral_angle_3_deg 16.986 r_dihedral_angle_1_deg 6.141 r_scangle_it 4.284 r_scbond_it 2.691 r_mcangle_it 2.187 r_angle_refined_deg 1.694 r_mcbond_it 1.302 r_symmetry_hbond_refined 0.665 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.111 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8974 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement