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Crystal structure of the C-terminal half of UvrC, in the presence of sulfate molecules
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NRR pdb entry 2NRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 1.8 M ammonium sulfate, 0.05 M Tris (pH 8.5), 0.025 M magnesium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.79 55.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.359 α = 90 b = 81.015 β = 98.02 c = 99.619 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 97.2 0.071 12.2 3.3 42886 42886 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 94.8 0.337 3.3 4220
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2NRR 1.9 40 40886 40886 2145 97.19 0.187 0.187 0.184 0.1841 0.24 0.2395 RANDOM 27.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 0.12 2.29 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 21.123 r_dihedral_angle_3_deg 16.356 r_dihedral_angle_1_deg 6.372 r_scangle_it 4.211 r_scbond_it 2.684 r_angle_refined_deg 1.606 r_mcangle_it 1.592 r_mcbond_it 1.022 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 21.123 r_dihedral_angle_3_deg 16.356 r_dihedral_angle_1_deg 6.372 r_scangle_it 4.211 r_scbond_it 2.684 r_angle_refined_deg 1.606 r_mcangle_it 1.592 r_mcbond_it 1.022 r_nbtor_refined 0.31 r_symmetry_hbond_refined 0.234 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.221 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.138 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3446 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 46
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing