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Crystal Structure of Protein of Unknown Function SO2669 from Shewanella oneidensis MR-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 40% MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.25 45.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.449 α = 90 b = 69.879 β = 90 c = 129.292 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-09-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9791, 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 99.5 0.103 20.6 6.9 45546 45319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 93.2 0.64 2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 40 45330 42681 2262 99.17 0.18396 0.18143 0.1858 0.23066 0.229 RANDOM 21.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.1 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.214 r_dihedral_angle_3_deg 14.106 r_dihedral_angle_4_deg 12.447 r_dihedral_angle_1_deg 4.754 r_scangle_it 4.222 r_scbond_it 2.953 r_mcangle_it 1.825 r_mcbond_it 1.57 r_angle_refined_deg 1.449 r_angle_other_deg 0.942
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.214 r_dihedral_angle_3_deg 14.106 r_dihedral_angle_4_deg 12.447 r_dihedral_angle_1_deg 4.754 r_scangle_it 4.222 r_scbond_it 2.953 r_mcangle_it 1.825 r_mcbond_it 1.57 r_angle_refined_deg 1.449 r_angle_other_deg 0.942 r_mcbond_other 0.311 r_symmetry_vdw_other 0.28 r_nbd_refined 0.224 r_nbd_other 0.2 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.175 r_symmetry_hbond_refined 0.166 r_symmetry_vdw_refined 0.115 r_chiral_restr 0.088 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3935 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing