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Crystal structure of ig-like domain 23 from human filamin C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 17.5% PEG 10000, 0.2M imidazole malate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.95 36.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.141 α = 90 b = 52.141 β = 90 c = 69.216 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2003-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.2 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 45.17 97.1 0.07 0.061 7.1 7.3 7116 7027 37.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.16 97.7 0.298 0.298 2.1 6.5 950
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 45.17 7116 7016 329 97.51 0.19 0.19 0.188 0.1948 0.237 0.2628 RANDOM 36.963
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.28 0.55 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.058 r_dihedral_angle_3_deg 13.785 r_dihedral_angle_4_deg 7.013 r_dihedral_angle_1_deg 5.543 r_scangle_it 3.207 r_scbond_it 2.379 r_mcangle_it 1.554 r_mcbond_it 1.34 r_angle_refined_deg 1.288 r_angle_other_deg 0.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.058 r_dihedral_angle_3_deg 13.785 r_dihedral_angle_4_deg 7.013 r_dihedral_angle_1_deg 5.543 r_scangle_it 3.207 r_scbond_it 2.379 r_mcangle_it 1.554 r_mcbond_it 1.34 r_angle_refined_deg 1.288 r_angle_other_deg 0.728 r_symmetry_vdw_other 0.259 r_nbd_other 0.229 r_mcbond_other 0.191 r_nbd_refined 0.181 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.113 r_symmetry_vdw_refined 0.11 r_symmetry_hbond_refined 0.098 r_nbtor_other 0.089 r_chiral_restr 0.073 r_metal_ion_refined 0.026 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 689 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection DENZO data reduction SCALA data scaling SHARP phasing