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Crystal Structure of the complex of human mitogen activated protein kinase kinase 5 phox domain (MAP2K5-phox) with human mitogen activated protein kinase kinase kinase 2 phox domain (MAP3K2-phox)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CU1 pdb entries 2CU1, 2C60, 1WI0 experimental model PDB 2C60 pdb entries 2CU1, 2C60, 1WI0 experimental model PDB 1WI0 pdb entries 2CU1, 2C60, 1WI0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2M NH4(CH3COO), 0.1M TRIS, 25% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.333 α = 90 b = 61.41 β = 90 c = 143.651 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-09-23 M SINGLE WAVELENGTH 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 61.43 99.9 0.063 0.063 7.3 6.7 42261 42219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 99.5 0.876 0.876 0.8 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entries 2CU1, 2C60, 1WI0 1.75 32 42218 40100 2038 99.81 0.20166 0.19937 0.2018 0.2475 0.2475 RANDOM 22.244
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.63 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.856 r_dihedral_angle_4_deg 15.387 r_dihedral_angle_3_deg 13.416 r_dihedral_angle_1_deg 5.831 r_scangle_it 4.033 r_scbond_it 2.733 r_mcangle_it 1.859 r_angle_refined_deg 1.519 r_mcbond_it 1.191 r_angle_other_deg 0.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.856 r_dihedral_angle_4_deg 15.387 r_dihedral_angle_3_deg 13.416 r_dihedral_angle_1_deg 5.831 r_scangle_it 4.033 r_scbond_it 2.733 r_mcangle_it 1.859 r_angle_refined_deg 1.519 r_mcbond_it 1.191 r_angle_other_deg 0.974 r_symmetry_vdw_refined 0.295 r_mcbond_other 0.284 r_symmetry_vdw_other 0.212 r_nbd_other 0.208 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.174 r_nbtor_refined 0.172 r_chiral_restr 0.091 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2929 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection MOSFLM data reduction CCP4 data scaling