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Crystal structure of HIV1 protease in situ product complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 Ammonium Sulfate precipitant, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.01 38.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.03 α = 90 b = 62.03 β = 90 c = 81.78 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97945 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 32.53 97 0.081 0.081 10.16 5.53 20957 20326 39.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 32.53 20957 20326 1069 100 0.216 0.216 0.214 0.259 RANDOM 33.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.938 r_dihedral_angle_4_deg 14.582 r_dihedral_angle_3_deg 12.526 r_dihedral_angle_1_deg 5.207 r_scangle_it 4.892 r_scbond_it 2.941 r_mcangle_it 1.945 r_angle_refined_deg 1.546 r_mcbond_it 1.16 r_symmetry_hbond_refined 0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.938 r_dihedral_angle_4_deg 14.582 r_dihedral_angle_3_deg 12.526 r_dihedral_angle_1_deg 5.207 r_scangle_it 4.892 r_scbond_it 2.941 r_mcangle_it 1.945 r_angle_refined_deg 1.546 r_mcbond_it 1.16 r_symmetry_hbond_refined 0.76 r_nbtor_refined 0.331 r_symmetry_vdw_refined 0.288 r_xyhbond_nbd_refined 0.283 r_nbd_refined 0.253 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1585 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction XDS data scaling CNS phasing