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CRYSTAL STRUCTURE OF NITROPHORIN 1 FROM RHODNIUS PROLIXUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NP1 PDB ENTRY 1NP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.8 M AMMONIUM PHOSPHATE, 0.1 M TRIS.HCL, PH 7.5, ROOM TEMPERATURE
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.52 α = 90 b = 74.28 β = 99.46 c = 66.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 DIFFRACTOMETER ENRAF-NONIUS FAST COLLIMATOR 1996-06-03 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28 95.1 0.07 5.1 2.1 24349 24.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.14 91.4 0.234 2.4 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT PDB ENTRY 1NP1 2 15 21830 630 83.3 0.208 0.208 0.1953 0.302 0.2706 RANDOM 33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 29.7 x_scangle_it 5.4 x_mcangle_it 3.9 x_scbond_it 3.5 x_mcbond_it 2.3 x_angle_deg 1.9 x_improper_angle_d 1.41 x_bond_d 0.016 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 29.7 x_scangle_it 5.4 x_mcangle_it 3.9 x_scbond_it 3.5 x_mcbond_it 2.3 x_angle_deg 1.9 x_improper_angle_d 1.41 x_bond_d 0.016 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2886 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 244
Software Software Software Name Purpose MADNES data collection AGROVATA/ROTAVATA data reduction X-PLOR model building X-PLOR refinement MADNES data reduction Agrovata data scaling ROTAVATA data scaling X-PLOR phasing