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Structure of Conserved Protein of Unknown Function EF2215 from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 0.2 M magnesium chloride, 0.1 M MES buffer, 30% PEG 4000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2 38.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.227 α = 90 b = 69.03 β = 90 c = 86.766 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 34.52 99.9 0.11 36.2 17 31303 31303 23.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 98.2 0.582 2.07 4.7 1684
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 34.52 31125 31125 2392 99.22 0.1535 0.1535 0.1502 0.1492 0.1932 0.1927 RANDOM 19.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 0.6 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.509 r_dihedral_angle_3_deg 15.293 r_dihedral_angle_4_deg 13.803 r_sphericity_free 6.817 r_dihedral_angle_1_deg 5.73 r_scangle_it 5.223 r_sphericity_bonded 4.462 r_scbond_it 4.322 r_rigid_bond_restr 3.677 r_mcangle_it 2.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.509 r_dihedral_angle_3_deg 15.293 r_dihedral_angle_4_deg 13.803 r_sphericity_free 6.817 r_dihedral_angle_1_deg 5.73 r_scangle_it 5.223 r_sphericity_bonded 4.462 r_scbond_it 4.322 r_rigid_bond_restr 3.677 r_mcangle_it 2.661 r_angle_refined_deg 1.9 r_mcbond_it 1.891 r_nbtor_refined 0.324 r_symmetry_vdw_refined 0.299 r_symmetry_hbond_refined 0.248 r_nbd_refined 0.243 r_xyhbond_nbd_refined 0.22 r_chiral_restr 0.18 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1423 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction StructureStudio data collection SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing