☰ Navigation Tabs
Crystal structure of cephalosporin acylase from Bacillus halodurans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 200MM SODIUM FORMATE, PH 7.5, 20% PEG 3350, 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.63 53.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.745 α = 90 b = 105.745 β = 90 c = 385.062 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2005-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 50 96.4 0.11 0.109 6.4 5.8 70277 70277 18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.7 20 64321 2011 95.22 0.2109 0.20982 0.2087 0.24458 0.2396 RANDOM 45.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.501 r_dihedral_angle_3_deg 19.573 r_dihedral_angle_4_deg 17.771 r_scangle_it 10.854 r_scbond_it 7.946 r_mcangle_it 7.239 r_dihedral_angle_1_deg 6.361 r_mcbond_it 4.703 r_angle_refined_deg 1.251 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.501 r_dihedral_angle_3_deg 19.573 r_dihedral_angle_4_deg 17.771 r_scangle_it 10.854 r_scbond_it 7.946 r_mcangle_it 7.239 r_dihedral_angle_1_deg 6.361 r_mcbond_it 4.703 r_angle_refined_deg 1.251 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.217 r_symmetry_vdw_refined 0.189 r_nbd_refined 0.186 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.093 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16590 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling SHELXS phasing