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CRYSTAL STRUCTURE OF A XISI-LIKE PROTEIN (AVA_3825) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.30 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 277 1.0M LiCl, 20.0% PEG-6000, 0.1M TRIS, pH 8.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.779 α = 90 b = 37.354 β = 97.22 c = 63.453 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0000, 0.9795, 0.9792 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 29.099 98.2 0.062 0.062 7.9 3.6 52812 11.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 96.3 0.618 0.618 1.2 3.6 3797
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 29.099 52745 2675 98.13 0.176 0.175 0.183 0.195 0.1993 RANDOM 9.824
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.29 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.736 r_dihedral_angle_4_deg 21.174 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_1_deg 6.642 r_scangle_it 5.631 r_scbond_it 3.917 r_mcangle_it 2.48 r_mcbond_it 2.003 r_angle_refined_deg 1.758 r_angle_other_deg 1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.736 r_dihedral_angle_4_deg 21.174 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_1_deg 6.642 r_scangle_it 5.631 r_scbond_it 3.917 r_mcangle_it 2.48 r_mcbond_it 2.003 r_angle_refined_deg 1.758 r_angle_other_deg 1 r_mcbond_other 0.463 r_symmetry_vdw_refined 0.39 r_symmetry_vdw_other 0.31 r_nbd_refined 0.239 r_nbd_other 0.206 r_xyhbond_nbd_refined 0.193 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.103 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1808 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 4
Software Software Software Name Purpose MolProbity model building REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing RESOLVE phasing