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Crystal structure of the Mcl-1:Bim BH3 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.75 298 0.2M zinc acetate, 0.2M imidazole, 2mM TCEP, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.38 α = 90 b = 70.08 β = 90 c = 117.18 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 monochrometer 2005-11-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791, 0.9792, 0.9715 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 85.1 0.067 160.5 10.9 29809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 28.2 0.503 976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 34.12 28898 1469 91.11 0.174 0.173 0.2005 0.203 0.228 RANDOM 24.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.14 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.736 r_dihedral_angle_4_deg 15.317 r_dihedral_angle_3_deg 12.505 r_dihedral_angle_1_deg 4.407 r_scangle_it 3.59 r_scbond_it 2.491 r_mcangle_it 1.604 r_angle_refined_deg 1.386 r_mcbond_it 1.061 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.736 r_dihedral_angle_4_deg 15.317 r_dihedral_angle_3_deg 12.505 r_dihedral_angle_1_deg 4.407 r_scangle_it 3.59 r_scbond_it 2.491 r_mcangle_it 1.604 r_angle_refined_deg 1.386 r_mcbond_it 1.061 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.23 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.086 r_metal_ion_refined 0.044 r_symmetry_metal_ion_refined 0.043 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1349 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHELXE model building