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Solution NMR structures of BRD4 ET domain with LANA peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 90% H2O/10% D2O 6.5 ambient 298 2 3D HNCACB 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 90% H2O/10% D2O 6.5 ambient 298 3 3D CBCA(CO)NH 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 90% H2O/10% D2O 6.5 ambient 298 4 3D 1H-15N NOESY 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 90% H2O/10% D2O 6.5 ambient 298 5 3D 1H-15N TOCSY 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 90% H2O/10% D2O 6.5 ambient 298 6 3D 1H-13C NOESY aliphatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 ambient 298 7 3D 1H-13C NOESY aromatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 ambient 298 8 2D 1H-13C HSQC 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 ambient 298 9 3D filtered 1H-13C NOESY aliphatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 ambient 298 10 3D filtered 1H-13C NOESY aromatic 10 mM sodium phosphate, 100 mM sodium chloride, 2 mM [U-100% 2H] DTT 100% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 900 3 Bruker AVANCE 600 4 Bruker AVANCE 500
NMR Refinement Method Details Software torsion angle dynamics, distance geometry ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement ARIA 2.3 Linge, O'Donoghue and Nilges 2 chemical shift calculation NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking NMRView 5.04 Johnson, One Moon Scientific 5 chemical shift assignment NMRView 5.04 Johnson, One Moon Scientific 6 data analysis NMRView 5.04 Johnson, One Moon Scientific 7 refinement TALOS Cornilescu, Delaglio and Bax 8 geometry optimization CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 9 structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 10 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 11 collection TopSpin Bruker Biospin 12 structure solution ProcheckNMR Laskowski and MacArthur