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Glucose as a nuclease mimic in DNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), 1 mM SUGAR 90% H2O/10% D2O Potassium phosphate 7 ambient 279.6 2 2D 1H-1H NOESY 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), 1 mM SUGAR 90% H2O/10% D2O Potassium phosphate 7 ambient 279.6 3 2D 1H-1H TOCSY 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), 1 mM SUGAR 90% H2O/10% D2O Potassium phosphate 7 ambient 279.6 4 2D 1H-1H COSY 1 mM DNA (5'-D(*GP*AP*TP*GP*AP*CP*TP*GP*CP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*GP*CP*(GL6)P*GP*TP*CP*AP*TP*C)-3'), 1 mM SUGAR 90% H2O/10% D2O Potassium phosphate 7 ambient 279.6
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was determined using NOE data
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman 2 chemical shift assignment Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman 3 processing Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman 4 refinement Sparky Goddard 5 chemical shift assignment Sparky Goddard 6 processing Sparky Goddard 7 refinement Amber Bruker Biospin 8 chemical shift assignment Amber Bruker Biospin 9 processing Amber Bruker Biospin