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TrkA transmembrane domain NMR structure in DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 3 3D HNCO 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 4 3D HNCA 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 6 3D HNHA 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 7 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 8 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318 9 3D HN(CO)CA 1 mM [U-100% 13C; U-100% 15N] protein, 1 mM protein, 40 mM [U-100% 2H] DPC, 20 mM potassium phosphate 95% H2O/5% D2O 5.9 ambient 318
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement CYANA Guntert, Mumenthaler and Wuthrich 5 visualization MOLMOL Koradi, Billeter and Wuthrich 6 chemical shift assignment CARA Keller and Wuthrich 7 data analysis CARA Keller and Wuthrich 8 peak picking CARA Keller and Wuthrich