2N54
Solution structure of a disulfide stabilized XCL1 dimer
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-99% 13C; U-99% 15N] XCL1, 20 mM potassium phosphate, 0.02 % [U-100% 15N] sodium azide | 90% H2O/10% D2O | 0.02 | 6.0 | ambient | 313 | |
2 | 3D 1H-13C NOESY aliphatic | 1 mM [U-99% 13C; U-99% 15N] XCL1, 20 mM potassium phosphate, 0.02 % [U-100% 15N] sodium azide | 90% H2O/10% D2O | 0.02 | 6.0 | ambient | 313 | |
3 | 3D 1H-13C NOESY aromatic | 1 mM [U-99% 13C; U-99% 15N] XCL1, 20 mM potassium phosphate, 0.02 % [U-100% 15N] sodium azide | 90% H2O/10% D2O | 0.02 | 6.0 | ambient | 313 | |
4 | 3D F1-13C/F3-13C edited NOESY | 1 mM [U-99% 13C; U-99% 15N] XCL1, 20 mM potassium phosphate, 0.02 % [U-100% 15N] sodium azide | 90% H2O/10% D2O | 0.02 | 6.0 | ambient | 313 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | XEASY | Bartels et al. | |
4 | chemical shift assignment | GARANT | Bartels, Guntert, Billeter and Wuthrich | |
5 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
6 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
8 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
9 | refinement | X-PLOR NIH |