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NMR structure of the Y48pCMF variant of human cytochrome c in its reduced state
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 2 3D 1H-15N NOESY 0.7 mM [U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 3 2D 1H-15N HSQC 0.7 mM [U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 4 2D 1H-13C HSQC 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 5 2D 1H-1H NOESY 0.7 mM [U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 6 3D CBCA(CO)NH 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 7 3D HNCO 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 8 3D HNCA 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 9 3D HN(CO)CA 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 10 3D HBHA(CO)NH 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 11 3D HCCH-TOCSY 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 12 2D 1H-1H COSY 0.6 mM cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 13 2D 1H-13C HSQC aromatic 0.6 mM cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 14 3D HNCACB 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298 15 3D 1H-13C NOESY aliphatic 0.7 mM [U-99% 13C; U-99% 15N] cytochrome c 90% H2O/10% D2O 0.05 6.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 950 2 Bruker AVANCE 700 3 Bruker AVANCE 500 4 Bruker AVANCE 500
NMR Refinement Method Details Software distance geometry, molecular dynamics Molecular dynamics performed in solvent CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 2 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 collection TopSpin Bruker Biospin 4 processing TopSpin Bruker Biospin 5 geometry optimization TALOS Cornilescu, Delaglio and Bax 6 chemical shift assignment CARA Keller and Wuthrich 7 chemical shift calculation CARA Keller and Wuthrich 8 data analysis CARA Keller and Wuthrich 9 peak picking CARA Keller and Wuthrich 10 chemical shift assignment XEASY Bartels et al. 11 chemical shift calculation XEASY Bartels et al. 12 data analysis XEASY Bartels et al. 13 peak picking XEASY Bartels et al. 14 processing XEASY Bartels et al. 15 refinement CYANA Guntert, Mumenthaler and Wuthrich