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Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the extended binding mode
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.3 MM [U-100% 15N] PROTEIN_1, 0.04-1.2 MM PROTEIN_2, 50 MM HEPES, 50 MM SODIUM CHLORIDE, 1 MM EDTA, 2 MM DTT, 0.1 % SODIUM AZIDE, 95% H2O/5% D2O 50 6.7 AMBIENT 298 2 2D 1H-13C HSQC aliphatic 0.3 MM [U-100% 15N] PROTEIN_1, 0.04-1.2 MM PROTEIN_2, 50 MM HEPES, 50 MM SODIUM CHLORIDE, 1 MM EDTA, 2 MM DTT, 0.1 % SODIUM AZIDE, 95% H2O/5% D2O 3 3D 1H-13C NOESY aliphatic 0.3 MM [U-100% 15N] PROTEIN_1, 0.04-1.2 MM PROTEIN_2, 50 MM HEPES, 50 MM SODIUM CHLORIDE, 1 MM EDTA, 2 MM DTT, 0.1 % SODIUM AZIDE, 95% H2O/5% D2O 4 3D 13C-HALF FILTER NOESY 0.3 MM [U-100% 15N] PROTEIN_1, 0.04-1.2 MM PROTEIN_2, 50 MM HEPES, 50 MM SODIUM CHLORIDE, 1 MM EDTA, 2 MM DTT, 0.1 % SODIUM AZIDE, 95% H2O/5% D2O 5 4D HMQC-NOESY-HMQC 0.3 MM [U-100% 15N] PROTEIN_1, 0.04-1.2 MM PROTEIN_2, 50 MM HEPES, 50 MM SODIUM CHLORIDE, 1 MM EDTA, 2 MM DTT, 0.1 % SODIUM AZIDE, 95% H2O/5% D2O
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 850
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number 50 Conformers Submitted Total Number 10 Representative Model 1 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH SCHWIETERS, KUSZEWSKI, TJ 2 structure solution TopSpin 3 structure solution NMRPipe 4 structure solution XEASY 5 structure solution X-PLOR NIH NIH 6 structure solution TALOS 7 structure solution PROCHECKNMR