2N3L

Solution structure of RNA recognition motif-1 of Plasmodium falciparum serine/arginine-rich protein 1.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
22D 1H-13C HSQC aliphatic0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
32D 1H-13C HSQC aromatic0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
43D HNCO0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
53D HNCACB0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
63D CBCA(CO)NH0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
73D C(CO)NH0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
83D H(CCO)NH0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
93D 1H-15N NOESY0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
103D 1H-13C NOESY aromatic0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
113D 1H-13C NOESY aliphatic0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate90% H2O/10% D2O1255.9ambient298
123D 1H-13C NOESY aliphatic0.5-1 mM [U-100% 13C; U-100% 15N] PfSR1-RRM1, 25 mM sodium phosphate, 100 mM sodium chloride, 3 mM TCEP, 50 mM L-arginine, 25 mM L-glutamate100% D2O1255.9ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealing, simulated annealingRefinement in explicit waterTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.1Bruker Biospin
2processingTopSpin2.1Bruker Biospin
3peak pickingCARA1.8.4Keller and Wuthrich
4chemical shift assignmentCARA1.8.4Keller and Wuthrich
5data analysisCARA1.8.4Keller and Wuthrich
6peak pickingCYANAGuntert, Mumenthaler and Wuthrich
7structure solutionCYANAGuntert, Mumenthaler and Wuthrich
8refinementCNS1.3Brunger, Adams, Clore, Gros, Nilges and Read
9refinementCYANA