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Solution NMR Structure of DE NOVO DESIGNED PROTEIN (FDA_60), Northeast Structural Genomics Consortium (NESG) Target OR303
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 2 2D 1H-13C HSQC 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 3 3D HNCO 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 4 3D CBCA(CO)NH 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 5 3D HNCACB 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 6 3D 1H-13C arom NOESY 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298 7 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 0.87 mM [U-100% 13C; U-100% 15N] OR303.005 90% H2O/10% D2O 4.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 3 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 4 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 peak picking XEASY Bartels et al. 7 collection TopSpin Bruker Biospin 8 collection VnmrJ Varian 9 data analysis Sparky Goddard 10 geometry optimization TALOS+ Shen, Cornilescu, Delaglio and Bax 11 data analysis PSVS Bhattacharya, Montelione 12 refinement CYANA Guntert, Mumenthaler and Wuthrich 13 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read