2N1G

Structure of C-terminal domain of human polymerase Rev1 in complex with PolD3 RIR-motif


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
22D 1H-13C HSQC0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
33D HNCO0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
43D HNCACB0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
53D HBHA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
63D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
73D CCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
83D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
93D 1H-15N NOESY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
102D 1H-1H (filt.) TOCSY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
112D 1H-1H (filt.) NOESY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
123D 1H-13C (CNfilt.) NOESY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
133D 1H-15N (CNfilt.) NOESY0.5 mM [U-100% 13C; U-100% 15N] Rev1-CT, 0.5-0.8 mM PolD3, 50 mM potassium phosphate, 100 mM sodium chloride, 2 mM DTT, 0.5 mM EDTA90% H2O/10% D2O1007.0ambient288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianAVANCE500
2VarianAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
2processingNMRPipe5.5Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCARA1.9.0Keller and Wuthrich
4chemical shift calculationCARA1.9.0Keller and Wuthrich
5peak pickingCARA1.9.0Keller and Wuthrich
6refinementABACUS_(CNS)Brunger, Adams, Clore, Gros, Nilges and Read
7data analysisTALOS2.20Cornilescu, Delaglio and Bax