2N0H
NMR structure of Neuromedin C in presence of SDS micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 150 mM [U-99% 2H] SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 | |
2 | 2D 1H-1H NOESY | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 150 mM [U-99% 2H] SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 | |
3 | 2D 1H-15N HSQC | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 150 mM [U-99% 2H] SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 | |
4 | 2D 1H-13C HSQC | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 150 mM [U-99% 2H] SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 | |
5 | 2D 1H-13C HSQC aromatic | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 150 mM [U-99% 2H] SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 | |
6 | 2D 1H-1H NOESY | 5.0 mM Neuromedin C, 10 mM sodium acetate, 1.6 mM DSS, 50 mM SDS | 90% H2O/10% D2O | 0.01 | 4.0 | ambient atm | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | peak picking | XEASY | Bartels et al. | |
3 | chemical shift assignment | XEASY | Bartels et al. | |
4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | geometry optimization | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |