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Solution structure of Family 1 Carbohydrate-Binding Module from Trichoderma reesei Cel7A with O-mannose residues at Thr1 and Ser3
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-1H TOCSY
1.7 mg CBM_2M
90% H2O/10% D2O
30
5
ambient
300
2
2D DQF-COSY
1.7 mg CBM_2M
90% H2O/10% D2O
30
5
ambient
300
3
2D 1H-1H NOESY
1.7 mg CBM_2M
90% H2O/10% D2O
30
5
ambient
300
4
2D 1H-1H TOCSY
1.7 mg CBM_2M
100% D2O
30
5
ambient
300
5
2D DQF-COSY
1.7 mg CBM_2M
90% H2O/10% D2O
30
5
ambient
288
6
2D 1H-1H NOESY
1.7 mg CBM_2M
90% H2O/10% D2O
30
5
ambient
288
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
600
NMR Refinement
Method
Details
Software
simulated annealing, molecular dynamics
30 conformers initially calculated were refined with 4 rounds of SA, Final selection of structures for submission was done based on the behavior of the models during the 200 ns trajectories: only models which stayed within 3 RMSD of the starting structures were selected.
TopSpin
NMR Ensemble Information
Conformer Selection Criteria
molecular dynamics
Conformers Calculated Total Number
30
Conformers Submitted Total Number
10
Representative Model
1 (fewest violations)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
collection
TopSpin
3.2
Bruker Biospin
2
processing
TopSpin
3.2
Bruker Biospin
3
data analysis
TopSpin
3.2
Bruker Biospin
4
chemical shift assignment
TopSpin
3.2
Bruker Biospin
5
peak picking
TopSpin
3.2
Bruker Biospin
6
refinement
XPLOR-NIH
Schwieters, Kuszewski, Tjandra and Clore
7
refinement
CHARMM_DOMDEC
Brooks, Bruccoleri, Olafson, States, Swaminathan, and Karplus