Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
HADDOCK modelling consists of (i) rigid-body docking, (ii) semi-flexible refinement stage and (iii) final refinement in explicit solvent., Final gentle water simulated annealing refinement protocol using molecular dynamics in Cartesian space.
NMRPipe
NMR Ensemble Information
Conformer Selection Criteria
target function
Conformers Calculated Total Number
400
Conformers Submitted Total Number
10
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
processing
NMRPipe
Delaglio, Zhengrong and Bax
2
peak picking
NMRView
Johnson, One Moon Scientific
3
chemical shift assignment
CARA
Keller and Wuthrich
4
calculation engine
CNS
2.0
Brunger, Adams, Clore, Gros, Nilges and Read
5
data-driven docking using cns as structure calculation engine