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Solution structure of the rhodanese domain of YgaP from E. coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 2 3D CBCA(CO)NH 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 3 3D HNCACB 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 4 3D HNCO 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 5 3D HBHA(CO)NH 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 6 3D H(CCO)NH 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 7 3D C(CO)NH 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 8 3D 1H-15N NOESY 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 90% H2O/10% D2O 0.05 7.0 ambient 298 9 3D HCCH-TOCSY 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 100% D2O 0.05 7.0 ambient 298 10 3D HCCH-COSY 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 100% D2O 0.05 7.0 ambient 298 11 3D 1H-13C NOESY 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 100% D2O 0.05 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 700
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 peak picking Sparky Goddard 4 chemical shift assignment Sparky Goddard 5 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore