2MRK
Fyn SH2 domain in complex with the natural inhibitory phosphotyrosine peptide
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.93 mM [U-99% 13C; U-99% 15N] protein_1, 1.2 mM protein_2 | 93% H2O/7% D2O | 0 | 6.50 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 0.93 mM [U-99% 13C; U-99% 15N] protein_1, 1.2 mM protein_2 | 93% H2O/7% D2O | 0 | 6.50 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | Varian NMR Systems | 600 |
2 | Varian | Varian NMR Systems | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, simulated annealing | HADDOCK runs under CNS | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 27 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | CCPNMR | CCPN | |
3 | peak picking | CCPNMR | CCPN | |
4 | structure solution | HADDOCK | Alexandre Bonvin | |
5 | refinement | HADDOCK | Alexandre Bonvin | |
6 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
7 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |