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Solution NMR Structure of De novo designed protein LFR1 1 with ferredoxin fold, Northeast Structural Genomics Consortium (NESG) Target OR414
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 2 2D 1H-13C HSQC 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 3 3D HNCO 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 4 3D CBCA(CO)NH 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 5 3D HNCACB 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 6 3D 1H-13C arom NOESY 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 7 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 8 3D CCH-TOCSY 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 9 2D 1H-13C HSQC 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298 10 2D 1H-15N HSQC 0.885 mM OR414.005 90% H2O/10% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600 3 Varian INOVA 600
NMR Refinement Method Details Software distance geometry, molecular dynamics, simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read 4 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich 6 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 7 data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione 8 refinement AutoStructure 2.1 Huang, Tejero, Powers and Montelione 9 data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 10 chemical shift assignment AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione 11 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 data analysis XEASY Bartels et al. 13 chemical shift assignment XEASY Bartels et al. 14 peak picking XEASY Bartels et al. 15 collection TopSpin Bruker Biospin 16 collection VnmrJ Varian 17 data analysis Sparky Goddard 18 geometry optimization TALOS+ Shen, Cornilescu, Delaglio and Bax 19 geometry optimization REDCAT Valafar, Prestegard 20 structure validation PSVS Bhattacharya, Montelione