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3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane protein YgaP from Escherichia coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 2 3D HNCA 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 3 3D HN(CO)CA 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O 4 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 5 3D 1H-13C NOESY 0.5 mM [U-100% 13C; U-100% 15N] YgaP 95% H2O/5% D2O 0 7.0 ambient 303 6 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] YgaP 95% H2O/5% D2O
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment XEASY Bartels et al. 3 refinement CYANA Guntert, Mumenthaler and Wuthrich