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3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 2 3D HN(CO)CA 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 3 3D HNCA 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 4 3D HNCACB 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 5 3D HCCH-TOCSY 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 6 3D 1H-15N NOESY 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 7 3D 1H-15N TOCSY 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303 8 3D 1H-13C NOESY 2 mM [U-100% 13C; U-100% 15N] YgaP 90% H2O/10% D2O 0 7.0 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 10 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CYANA Herrmann, Guntert and Wuthrich 2 structure solution CYANA Herrmann, Guntert and Wuthrich 3 refinement CYANA Herrmann, Guntert and Wuthrich