2MNF

AIK-18/51 DNA recognition sequence d(CGACTAGTCG)2

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H TOCSY	2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298
2	2D 1H-1H COSY	2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298
3	2D 1H-1H NOESY	2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3'	90% H2O/10% D2O	0.05	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
molecular dynamics		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	1
Conformers Submitted Total Number	1
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	TopSpin		Bruker Biospin
3	chemical shift assignment	Sparky		Goddard
4	data analysis	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	geometry optimization	SYBYL		Tripos
7	structure building	SYBYL		Tripos
8	structure solution	SYBYL		Tripos
9	noe to distance restraint conversion	MARDIGRAS		Tripos
10	structure solution	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
11	geometry optimization	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
12	data analysis	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
13	refinement	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman