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AIK-18/51 DNA recognition sequence d(CGACTAGTCG)2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 2 2D 1H-1H COSY 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 3 2D 1H-1H NOESY 2 mM 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1 Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment Sparky Goddard 4 data analysis Sparky Goddard 5 peak picking Sparky Goddard 6 geometry optimization SYBYL Tripos 7 structure building SYBYL Tripos 8 structure solution SYBYL Tripos 9 noe to distance restraint conversion MARDIGRAS Tripos 10 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 11 geometry optimization Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 12 data analysis Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 13 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman