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AGC FAPY modified duplex Major isomer
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H COSY 0.5 mM DNA (5'-D(*CP*TP*AP*AP*(FAG)P*CP*TP*TP*CP*A)-3'), 0.5 mM DNA (5'-D(*TP*GP*AP*AP*GP*CP*TP*TP*AP*G)-3') 100% D2O 0.1 7 ambient 283 2 2D 1H-1H NOESY 0.5 mM DNA (5'-D(*CP*TP*AP*AP*(FAG)P*CP*TP*TP*CP*A)-3'), 0.5 mM DNA (5'-D(*TP*GP*AP*AP*GP*CP*TP*TP*AP*G)-3') 100% D2O 0.1 7 ambient 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 900
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum Conformers Calculated Total Number 10 Conformers Submitted Total Number 1 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 12 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 collection TopSpin 3 Bruker Biospin 3 processing TopSpin 3 Bruker Biospin 4 chemical shift assignment Sparky 3.115 Goddard 5 peak picking Sparky 3.115 Goddard