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Solution Structure of the Reduced Thioredoxin from Plasmodium falciparum
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM potassium chloride-7, 1 mM sodium azide-8, 0.1 mM DSS-9, 1 mM DTT-10 93% H2O/7% D2O 7 ambient 293 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] protein-11, 10 mM potassium chloride-12, 1 mM sodium azide-13, 0.1 mM DSS-14, 1 mM DTT-15 100% D2O 7 ambient 293 3 3D HNCA 1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM potassium chloride-7, 1 mM sodium azide-8, 0.1 mM DSS-9, 1 mM DTT-10 93% H2O/7% D2O 7 ambient 293 4 3D HNCO 1 mM [U-100% 13C; U-100% 15N] protein-6, 10 mM potassium chloride-7, 1 mM sodium azide-8, 0.1 mM DSS-9, 1 mM DTT-10 93% H2O/7% D2O 7 ambient 293 5 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] protein-11, 10 mM potassium chloride-12, 1 mM sodium azide-13, 0.1 mM DSS-14, 1 mM DTT-15 100% D2O 7 ambient 293 6 2D 1H-1H NOESY 1 mM protein-1, 10 mM potassium chloride-2, 1 mM sodium azide-3, 0.1 mM DSS-4, 1 mM DTT-5 93% H2O/7% D2O 7 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker DRX 800
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 data analysis AUREMOL Bruker Biospin 4 peak picking AUREMOL Bruker Biospin 5 data analysis TALOS Cornilescu, Delaglio and Bax 6 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 7 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read