2MM9
Solution structure of reduced BolA2 from Arabidopsis thaliana
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
3 | 2D 1H-13C HSQC aliphatic | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
4 | 3D CBCA(CO)NH | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
5 | 3D HNCO | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
6 | 3D HNCA | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
7 | 3D HN(CO)CA | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
8 | 3D HNHA | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
9 | 3D HNHB | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
10 | 3D 1H-15N NOESY | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
11 | 3D 1H-15N TOCSY | 0.9 mM [U-100% 13C; U-100% 15N] BolA2 | 90% H2O/10% D2O | 0.05 | 6 | ambient | 298 | |
12 | 2D 1H-15N HSQC | 0.9 mM [U-100% 15N] BolA2 | 100% D2O | 0.05 | 6 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
2 | structure solution | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
3 | refinement | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
4 | peak picking | CcpNmr | CCPN | |
5 | data analysis | CcpNmr | CCPN | |
6 | peak picking | NMRView | Johnson, One Moon Scientific | |
7 | structure solution | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
8 | refinement | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
9 | refinement | ARIA-CNS | Linge, O'Donoghue and Nilges |