2ML6
NMR structure of protein ZP_02069618.1 from Bacteroides uniformis ATCC 8492
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
2 | 4D APSY-HACANH | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
3 | 5D APSY-CBCACONH | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
4 | 5D APSY-HACACONH | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
5 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
6 | 3D 1H-13C NOESY aromatic | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 1.2 mM [U-99% 13C; U-99% 15N] protein, 0.03 % sodium azide, 50 mM sodium chloride, 20 mM sodium phosphate | 95% H2O/5% D2O | 0.0798 | 6 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert P. | |
2 | collection | CYANA | Guntert P. | |
3 | processing | CYANA | Guntert P. | |
4 | data analysis | CYANA | Guntert P. | |
5 | structure solution | TopSpin | Bruker Biospin | |
6 | collection | TopSpin | Bruker Biospin | |
7 | processing | TopSpin | Bruker Biospin | |
8 | data analysis | TopSpin | Bruker Biospin | |
9 | chemical shift assignment | CARA | Keller and Wuthrich | |
10 | data analysis | CARA | Keller and Wuthrich | |
11 | chemical shift assignment | j-UNIO | Herrmann and Wuthrich | |
12 | structure solution | j-UNIO | Herrmann and Wuthrich | |
13 | peak picking | GAPRO | Hiller | |
14 | geometry optimization | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich | |
15 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich |