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NMR structure of protein ZP_02064002.1 from Bacteroides ovatus ATCC 8483
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 APSY 4D-HACANH 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 2 APSY 5D-HACACONH 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 3 APSY 5D-CBCACONH 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 4 2D 1H-15N HSQC 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 5 3D 1H-15N NOESY 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 6 3D 1H-13C NOESY aliphatic 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 7 3D 1H-13C NOESY aromatic 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308 8 3D HNCA 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide 95% H2O/5% D2O 0.0798 6.0 ambient 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert P. 2 chemical shift assignment CYANA Guntert P. 3 peak picking CYANA Guntert P. 4 structure solution j-UNIO Herrmann and Wuthrich 5 chemical shift assignment j-UNIO Herrmann and Wuthrich 6 peak picking j-UNIO Herrmann and Wuthrich 7 data analysis CARA Keller and Wuthrich 8 geometry optimization OPAL Luginbuhl, Guntert, Billeter and Wuthrich 9 collection TopSpin 3.1 Bruker Biospin 10 processing TopSpin 3.1 Bruker Biospin 11 processing PROSA Guntert 12 peak picking GAPRO Hiller S 13 refinement OPAL Luginbuhl, Guntert, Billeter and Wuthrich