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Solution structure of CPEB1 ZZ domain in the free state
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 2 2D 1H-13C HSQC 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 3 2D 1H-13C HSQC aliphatic 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 4 2D 1H-13C HSQC aromatic 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 5 2D 1H-1H TOCSY 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 6 3D CBCA(CO)NH 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 7 3D HNCO 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 8 3D HNCA 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 9 3D HNCACB 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 10 3D HCCH-TOCSY 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 11 3D 1H-15N NOESY 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 12 3D 1H-13C NOESY aliphatic 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 13 3D 1H-13C NOESY aromatic 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303 14 2D 1H-1H NOESY 0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2 90% H2O/10% D2O 0.15 6.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 700 3 Bruker AVANCE 600 4 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 30 Conformers Submitted Total Number 26 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman