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NMR structure of p75 transmembrane domain C257A mutant in DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 2 2D 1H-13C HSQC 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 3 3D HNCO 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 4 3D HNCA 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 5 3D 1H-15N NOESY 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 6 3D 1H-13C NOESY 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 7 2D 1H-13C HSQC aromatic 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 8 3D HN(CO)CA 1.5 mM [U-100% 13C; U-100% 15N] p75-TM-C257A, 30 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 data analysis TopSpin Bruker Biospin 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 angles constrains prediction TALOS-N Yang Shen, and Ad Bax 6 chemical shift assignment CARA Keller, R 7 data analysis CARA Keller, R 8 peak picking CARA Keller, R 9 structure visualization MOLMOL Koradi, Billeter and Wuthrich 10 processing qMDD Mayzel M, Orekhov V. 11 refinement CYANA