2MIZ

Structure of the m04/gp34 mouse Cytomegalovirus Immunoevasin core domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N TROSY-HSQC20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
23D HNCA20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
33D HNCACB20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
43D HNCO20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
53D HN(CA)CO20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
62D 1H-15N ARTSY20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 200 mM sodium chloride, 0.2-0.5 mM [U-15N; U-2H] protein, 7.5 % Pf1 phage95% H2O/5% D2O0.2606.5ambient285
72D 1H-15N ARTSY20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-15N; U-2H] protein, 5.5 % Ac/Bis-Ac, 20 % DADMAC95% H2O/5% D2O0.1106.5ambient285
83D 1H-13C NOESY aliphatic (HCH)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [ILVmethyl-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
93D 1H-13C NOESY aliphatic (CCH)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [ILVmethyl-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
102D 1H-13C HMQC methyl20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [ILVmethyl-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
113D 1H-15N NOESY (HCH)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [ILVmethyl-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
123D 1H-15N NOESY (HCN)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [ILVmethyl-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
133D 1H-15N NOESY (HNH)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
143D 1H-15N NOESY (NNH)20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-15N; U-2H] protein95% H2O/5% D2O0.1106.5ambient285
15SIM-HMCM(CGCBCA)CO20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
16HMCM(CG)CBCA20mM mM sodium phosphate, 5 % [U-99% 2H] D2O, 50 mM sodium chloride, 0.2-0.5 mM [U-13C; U-15N; U-2H; ILVmethyl-1H] protein95% H2O/5% D2O0.1106.5ambient285
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance900
2BrukerAvance600
3BrukerAvance800
4BrukerAvance600
NMR Refinement
MethodDetailsSoftware
RASRECThe high degree of order obtained for residues 21-22 and 175-176 in the deposited ensemble is inconsistent with the chemical shift-derived order parameters (<0.7) that suggest some residual mobility for these residuesnmrPipe
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number10000
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisnmrPipeDelaglio, Zhengrong and Bax
2chemical shift assignmentsparkyGoddard
3collectionTOPSPIN3.1Bruker Biospin
4structure solutionCS-Rosetta3.0Shen, Vernon, Baker and Bax
5refinementCS-Rosetta