☰ Navigation Tabs
NMR structure of p75 transmembrane domain in DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 2 2D 1H-13C HSQC aliphatic 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 3 2D 1H-13C HSQC aromatic 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 4 3D HNCO 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 5 3D HNCA 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 6 3D HN(CO)CA 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 7 3D 1H-15N NOESY 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 8 3D 1H-15N TOCSY 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 9 3D 1H-13C NOESY aliphatic 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318 10 3D 15N- and 13C-edited NOESY and 15N,13C-F1-filtered/F3-edited-NOESY 1.9 mM [U-100% 13C; U-100% 15N] p75-TM-wt, 95 mM [U-98% 2H] DPC, 20 mM sodium phosphate 95% H2O/5% D2O 5.9 ambient 318
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.0 Bruker Biospin 2 processing TopSpin 3.0 Bruker Biospin 3 data analysis TopSpin 3.0 Bruker Biospin 4 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 chemical shift assignment CARA Keller, R 6 peak picking CARA Keller, R 7 data analysis CARA Keller, R 8 angles constrains prediction TALOS-N Yang Shen, and Ad Bax 9 refinement CYANA Guntert, Mumenthaler and Wuthrich