2MHF

Solution structure of the cyclic-nucleotide binding homology domain of a KCNH channel


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM sodium phosphate-1, 150 mM sodium chloride-2, 1 mM DTT-3, 0.2-0.8 mM [U-100% 15N] protein-490% H2O/10% D2O1506.5ambient298
23D HNCACB0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
33D CBCA(CO)NH0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
43D C(CO)NH0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
53D HNCA0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
63D H(CCO)NH0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
73D HNCO0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
83D 1H-13C NOESY aliphatic0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-9, 20 mM sodium phosphate-10, 150 mM sodium chloride-11, 1 mM DTT-12100% D2O1506.5ambient298
93D 1H-15N NOESY0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
103D HCCH-COSY0.2-0.8 mM [U-100% 13C; U-100% 15N] protein-5, 20 mM sodium phosphate-6, 150 mM sodium chloride-7, 1 mM DTT-890% H2O/10% D2O1506.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingstarted with an extended structure. final structures are energy minimized.CYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number60
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANAGuntert, Mumenthaler and Wuthrich
2structure solutionX-PLOR-NIHSchwieters, Kuszewski, Tjandra and Clore
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4peak pickingNMRViewJohnson, One Moon Scientific
5refinementX-PLOR-NIH