Experiment: 2MF8

HADDOCK model of MyT1 F4F5 - DNA complex

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
2	2D 1H-15N HSQC	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
3	3D CBCA(CO)NH	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
4	3D HNCACB	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
5	3D HNCO	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
6	3D HN(CA)CO	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298
7	2D 1H-1H NOESY	0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA	90% H2O/10% D2O	60	7.2	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing	THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.	HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	10
Conformers Submitted Total Number	1
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	HADDOCK		Bonvin, A. et al.