2MF8
HADDOCK model of MyT1 F4F5 - DNA complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
2 | 2D 1H-15N HSQC | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
4 | 3D HNCACB | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
5 | 3D HNCO | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
6 | 3D HN(CA)CO | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 | |
7 | 2D 1H-1H NOESY | 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA | 90% H2O/10% D2O | 60 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA. | HADDOCK |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | HADDOCK | Bonvin, A. et al. |