2MEM
Solution NMR structure of SLED domain of Scml2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
2 | 2D 1H-13C HSQC | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
3 | 3D CBCA(CO)NH | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
4 | 3D HNCO | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
5 | 3D HNCA | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
6 | 3D HNCACB | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
7 | 3D HBHA(CO)NH | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
8 | 3D HCCH-TOCSY | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
9 | 3D 1H-15N NOESY | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 | |
10 | 3D 1H-13C NOESY | 0.3-1.0 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 250 | 7.2 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard | |
5 | data analysis | Sparky | Goddard | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | data analysis | TALOS | Cornilescu, Delaglio and Bax |