2MCK
Backbone 1H, 13C, and 15N Chemical Shift Assignments for murine norovirus CR6 NS1/2 protein
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 mM sodium phosphate, 300 mM sodium chloride, 0.5 mM [U-100% 13C; U-100% 15N] protein, DSS | 90% H2O/10% D2O | 7.5 | ambient | 296 | ||
2 | CBCANH | 50 mM sodium phosphate, 300 mM sodium chloride, 0.5 mM [U-100% 13C; U-100% 15N] protein, DSS | 90% H2O/10% D2O | 7.5 | ambient | 296 | ||
3 | 2D 1H-1H NOESY | 50 mM sodium phosphate, 300 mM sodium chloride, 0.5 mM protein, DSS | 90% H2O/10% D2O | 7.5 | ambient | 296 | ||
4 | 2D 1H-1H TOCSY | 50 mM sodium phosphate, 300 mM sodium chloride, 0.5 mM protein, DSS | 90% H2O/10% D2O | 7.5 | ambient | 296 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 900 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
4 | peak picking | Sparky | Goddard | |
5 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
7 | geometry optimization | ProcheckNMR | Laskowski and MacArthur | |
8 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |