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Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 5.5 mM DSS, 30% H2O/70% trifluoroethanol 30%H2O/70% trifluoroethanol 20 7.4 ambient 298 2 2D 1H-13C HSQC aliphatic 5.5 mM DSS, 30% H2O/70% trifluoroethanol 30%H2O/70% trifluoroethanol 20 7.4 ambient 298 3 2D 1H-13C HSQC aromatic 5.5 mM DSS, 30% H2O/70% trifluoroethanol 30%H2O/70% trifluoroethanol 20 7.4 ambient 298 4 2D 1H-1H TOCSY 5.5 mM DSS, 30% H2O/70% trifluoroethanol 30%H2O/70% trifluoroethanol 20 7.4 ambient 298 5 2D 1H-1H NOESY 5.5 mM DSS, 30% H2O/70% trifluoroethanol 30%H2O/70% trifluoroethanol 20 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 900
NMR Refinement Method Details Software molecular dynamics Structure refinement was performed using the explicit solvent model in the YASARA program suite. CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert, Mumenthaler and Wuthrich 2 refinement YASARA Krieger E.