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Structure, function, and tethering of DNA-binding domains in 54 transcriptional activators
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 2 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 3 3D HNCA 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 4 3D HN(CO)CA 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 6 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 7 3D C(CO)NH 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 8 3D H(CCO)NH 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 9 3D HBHA(CO)NH 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 10 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] sodium phosphate 100% D2O 100 7 303 11 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] sodium phosphate, 1 mM [U-100% 15N] sodium phosphate 95% H2O/5% D2O 100 7 303 12 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] sodium phosphate 100% D2O 100 7 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800 2 Bruker DRX 900
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 peak picking Sparky Goddard 3 data analysis Sparky Goddard 4 chemical shift assignment Sparky Goddard 5 structure solution CYANA Guntert, Mumenthaler and Wuthrich 6 refinement MOLMOL Koradi, Billeter and Wuthrich 7 chemical shift calculation TALOS Cornilescu, Delaglio and Bax 8 refinement CYANA Guntert, Mumenthaler and Wuthrich