2M87
Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
2 | 3D HNCACB | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
4 | 3D HNCO | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
5 | 3D HBHA(CO)NH | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
6 | 2D 1H-13C HSQC aliphatic | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-2 | 100% D2O | 0.03 | 6.0 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-2 | 100% D2O | 0.03 | 6.0 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-1 | 90% H2O/10% D2O | 0.03 | 6.0 | ambient | 298 | |
9 | 3D 1H-13C NOESY aliphatic | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-2 | 100% D2O | 0.03 | 6.0 | ambient | 298 | |
10 | 3D 1H-13C NOESY aromatic | 0.3 mM [U-99% 13C; U-99% 15N] PmrAc-2 | 100% D2O | 0.03 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | data analysis | NMRView | Johnson, One Moon Scientific | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | collection | TopSpin | Bruker Biospin | |
8 | processing | TopSpin | Bruker Biospin | |
9 | data analysis | ProcheckNMR | Laskowski and MacArthur |