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Solution structure of a Beta-Hairpin Peptidomimetic antibiotic that targets LptD in Pseudomonas sp.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D DQF-COSY 5 mM protein, 90 % H2O, 10 % D2O 90% H2O/10% D2O 0 2.3 ambient 298 2 2D 1H-1H TOCSY 5 mM protein, 90 % H2O, 10 % D2O 90% H2O/10% D2O 0 2.3 ambient 298 3 2D 1H-1H NOESY 5 mM protein, 90 % H2O, 10 % D2O 90% H2O/10% D2O 0 2.3 ambient 298 4 2D DQF-COSY 5 mM protein, 100 % D2O 100% D2O 0 2.3 ambient 298 5 2D 1H-1H TOCSY 5 mM protein, 100 % D2O 100% D2O 0 2.3 ambient 298 6 2D 1H-1H NOESY 5 mM protein, 100 % D2O 100% D2O 0 2.3 ambient 298 7 2D 1H-13C HSQC 5 mM protein, 100 % D2O 100% D2O 0 2.3 ambient 298 8 2D 1H-13C HMBC 5 mM protein, 100 % D2O 100% D2O 0 2.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin 2.0 Bruker Biospin 2 chemical shift assignment XEASY 1.53 Bartels et al. 3 structure solution DYANA 1.5 Guntert, Braun and Wuthrich 4 refinement DYANA Guntert, Braun and Wuthrich